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Clinical

Gene expression profiling indicates inflammatory pathways involved in IUGR due to placental insufficiency - GSE12216

Purpose

Intrauterine growth restriction (IUGR) represents a major obstetric challenge with perinatal complications and a risk factor of developing disease in adult life. Placental insufficiency is one of the common features accompanying IUGR. The aim of this study was to evaluate global placental gene expression profile in IUGR compared to normal pregnancies. Placental samples were collected by eight IUGR pregnancies with placental insufficiency ascertained by Doppler and eight healthy controls. A 30K Human Genome Survey Microarray v.2.0 (Applied Biosystems) was used to evaluate global gene expression profile. Principal component analysis showed good separation in terms of gene expression patterns between the groups. Pathway analysis with Bonferroni correction for multiple testing showed significant (p<0.05) up-regulation of inflammation mediated by chemokine and cytokine signalling pathway in the IUGR placentas. Genes involved in metabolism of glucocorticoids (HSD11B1 and DHRS2) were found differentially expressed. We found no imprinted genes to be differentially expressed and only one gene involved in epigenetic modifications (MBD3) to be down-regulated in the IUGR placentas, indicating that IUGR due to placental insufficiency is not associated to placental imprinting. Subgroup analysis between pure IUGR and IUGR with preeclampsia placentas showed only 27 differentially expressed genes suggesting common pathophysiology.

Hypothesis

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Experimental Design

Eight placental samples from normal human placenta compared to eight human placental samples from patients with intrauterine growth restrictions due to placental insufficiency

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
ABI Human Genome Survey v2
16 Samples Loaded: 16
Human (Homo sapiens)
placenta
IUGR
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample_title normal IUGR
GSM307186 placenta normal replicate 1 True
GSM307187 placenta normal replicate 2 True
GSM307188 placenta normal replicate 3 True
GSM307189 placenta normal replicate 4 True
GSM307190 placenta normal replicate 5 True
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Raw Signal
Raw Signal
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All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID !Sample Title Normal IUGR
GSM307186
placenta normal replicate 1
True
 
GSM307187
placenta normal replicate 2
True
 
GSM307188
placenta normal replicate 3
True
 
GSM307189
placenta normal replicate 4
True
 
GSM307190
placenta normal replicate 5
True
 
GSM307191
placenta normal replicate 6
True
 
GSM307192
placenta normal replicate 7
True
 
GSM307193
placenta normal replicate 8
True
 
GSM307194
placenta IUGR replicate 1
 
True
GSM307195
placenta IUGR replicate 2
 
True
GSM307196
placenta IUGR replicate 3
 
True
GSM307197
placenta IUGR replicate 4
 
True
GSM307198
placenta IUGR replicate 5
 
True
GSM307199
placenta IUGR replicate 6
 
True
GSM307200
placenta IUGR replicate 7
 
True
GSM307201
placenta IUGR replicate 8
 
True

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