Sample Set Annotation Tool: Gene expression profiling for placentas from pre-eclamptic, unexplained FGR and normal pregnancies

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

It has been well documented that pre-eclampsia and unexplained fetal growth restriction (FGR) has a common etiological background, but little is known about the linkage al the molecular level.we have performed global gene expression profiling by oligonucleotide microarrays for placentas from pre-eclamptic, unexplained FGR and normal pregnancies to further elucidate the mechanisms underlying the development of these two disorders.

Hypothesis

Experimental Design

The total number of samples used was 8 from pre-eclampsia, 8 from normotensive pregnancies with FGR and 8 from those without FGR.

Experimental Variables

Controls

Methods

Additional Information

Expected Samples:

24 Samples Loaded: 24

Species

Human (Homo sapiens)

Sample Source

placenta

Disease

pre-eclampsia, Fetal Growth Restriction

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample_title	tissue	disease state	!Sample Title	Disease state
GSM594041	Normotensive control pregnancy_1	Placenta	Normotensive control pregnancy	Normotensive control pregnancy_1	Normotensive control pregnancy
GSM594042	Normotensive control pregnancy_2	Placenta	Normotensive control pregnancy	Normotensive control pregnancy_2	Normotensive control pregnancy
GSM594043	Normotensive control pregnancy_3	Placenta	Normotensive control pregnancy	Normotensive control pregnancy_3	Normotensive control pregnancy
GSM594044	Normotensive control pregnancy_4	Placenta	Normotensive control pregnancy	Normotensive control pregnancy_4	Normotensive control pregnancy
GSM594045	Normotensive control pregnancy_5	Placenta	Normotensive control pregnancy	Normotensive control pregnancy_5	Normotensive control pregnancy

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File
sampleset4000011_sampleannotations_grouped.csv Sample Set Spreadsheet

Samples Viewer / Editor

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Sample ID	!Sample Title	Tissue	Disease state	!Sample Title	Disease state	Group
GSM594041	Normotensive control pregnancy_1	Placenta	Normotensive control pregnancy	Normotensive control pregnancy_1	Normotensive control pregnancy	Normotensive control pregnancy-Placenta
GSM594042	Normotensive control pregnancy_2	Placenta	Normotensive control pregnancy	Normotensive control pregnancy_2	Normotensive control pregnancy	Normotensive control pregnancy-Placenta
GSM594043	Normotensive control pregnancy_3	Placenta	Normotensive control pregnancy	Normotensive control pregnancy_3	Normotensive control pregnancy	Normotensive control pregnancy-Placenta
GSM594044	Normotensive control pregnancy_4	Placenta	Normotensive control pregnancy	Normotensive control pregnancy_4	Normotensive control pregnancy	Normotensive control pregnancy-Placenta
GSM594045	Normotensive control pregnancy_5	Placenta	Normotensive control pregnancy	Normotensive control pregnancy_5	Normotensive control pregnancy	Normotensive control pregnancy-Placenta
GSM594046	Normotensive control pregnancy_6	Placenta	Normotensive control pregnancy	Normotensive control pregnancy_6	Normotensive control pregnancy	Normotensive control pregnancy-Placenta
GSM594047	Normotensive control pregnancy_7	Placenta	Normotensive control pregnancy	Normotensive control pregnancy_7	Normotensive control pregnancy	Normotensive control pregnancy-Placenta
GSM594048	Normotensive control pregnancy_8	Placenta	Normotensive control pregnancy	Normotensive control pregnancy_8	Normotensive control pregnancy	Normotensive control pregnancy-Placenta
GSM594049	Fetal growth restriction (FGR) _1	Placenta	Fetal growth restriction (FGR)	Fetal growth restriction (FGR) _1	Fetal growth restriction	Fetal growth restriction -Placenta
GSM594050	Fetal growth restriction (FGR) _2	Placenta	Fetal growth restriction (FGR)	Fetal growth restriction (FGR) _2	Fetal growth restriction	Fetal growth restriction -Placenta
GSM594051	Fetal growth restriction (FGR) _3	Placenta	Fetal growth restriction (FGR)	Fetal growth restriction (FGR) _3	Fetal growth restriction	Fetal growth restriction -Placenta
GSM594052	Fetal growth restriction (FGR) _4	Placenta	Fetal growth restriction (FGR)	Fetal growth restriction (FGR) _4	Fetal growth restriction	Fetal growth restriction -Placenta
GSM594053	Fetal growth restriction (FGR) _5	Placenta	Fetal growth restriction (FGR)	Fetal growth restriction (FGR) _5	Fetal growth restriction	Fetal growth restriction -Placenta
GSM594054	Fetal growth restriction (FGR) _6	Placenta	Fetal growth restriction (FGR)	Fetal growth restriction (FGR) _6	Fetal growth restriction	Fetal growth restriction -Placenta
GSM594055	Fetal growth restriction (FGR) _7	Placenta	Fetal growth restriction (FGR)	Fetal growth restriction (FGR) _7	Fetal growth restriction	Fetal growth restriction -Placenta
GSM594056	Fetal growth restriction (FGR) _8	Placenta	Fetal growth restriction (FGR)	Fetal growth restriction (FGR) _8	Fetal growth restriction	Fetal growth restriction -Placenta
GSM594057	Pre-eclampsia_1	Placenta	Pre-eclampsia	Pre-eclampsia_1	Pre-eclampsia	Pre-eclampsia-Placenta
GSM594058	Pre-eclampsia_2	Placenta	Pre-eclampsia	Pre-eclampsia_2	Pre-eclampsia	Pre-eclampsia-Placenta
GSM594059	Pre-eclampsia_3	Placenta	Pre-eclampsia	Pre-eclampsia_3	Pre-eclampsia	Pre-eclampsia-Placenta
GSM594060	Pre-eclampsia_4	Placenta	Pre-eclampsia	Pre-eclampsia_4	Pre-eclampsia	Pre-eclampsia-Placenta
GSM594061	Pre-eclampsia_5	Placenta	Pre-eclampsia	Pre-eclampsia_5	Pre-eclampsia	Pre-eclampsia-Placenta
GSM594062	Pre-eclampsia_6	Placenta	Pre-eclampsia	Pre-eclampsia_6	Pre-eclampsia	Pre-eclampsia-Placenta
GSM594063	Pre-eclampsia_7	Placenta	Pre-eclampsia	Pre-eclampsia_7	Pre-eclampsia	Pre-eclampsia-Placenta
GSM594064	Pre-eclampsia_8	Placenta	Pre-eclampsia	Pre-eclampsia_8	Pre-eclampsia	Pre-eclampsia-Placenta

Group Sets View in Gene Expression Browser

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Module Analysis

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SIDRA