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Clinical

Deregulation of Gene Expression induced by Environmental Tobacco Smoke Exposure in Pregnancy - GSE30032

Purpose

Passive smoke intake by pregnant women may have detrimental effects such as spontaneous abortion, lower birth weight, stillbirth, and reduced infant lung function. To extend our knowledge on molecular effects of tobacco smoke exposure in pregnancy, we analyzed transcriptome alterations in passive smokers (PS) and compared them to those in active smokers (AS). Using Illumina Expression Beadchip with 24,526 transcript probes, gene expression patterns were assayed in placentas from PS (N=25) exposed to environmental tobacco smoke (ETS) throughout pregnancy and non-exposed (NS) counterparts (N=35), and in cord blood cells from their newborns. The ETS exposure was evaluated by questionnaire disclosure and cotinine measurement in maternal and cord bloods. A total of 196 genes were significantly deregulated in placentas of PS compared to NS. These genes were primary associated with extracellular matrix, apoptosis, blood clotting, response to stress, embryonic morphogenesis, and lipid metabolism. Cord blood of newborns of PS displayed differential expression of 116 genes encoding mainly neuronal factors, regulators of immunologic response, and protooncogenes. Gene ontology analyses highlighted some important biological processes that might be associated with placental insufficiency and fetal growth restriction in PS, such as fatty acid catabolism, coagulation, regulation of growth, and response to steroid hormone stimulus. The study demonstrates that even low dose exposure to ETS during pregnancy leads to the significant deregulation of transcriptional regulation in placental and fetal cells. The data suggest the effect of ETS on the fetus is primary indirect, mediated via deregulation of placental functions. Comparison of PS and AS indicated that ETS exposure and active smoking in pregnancy partly employ the same molecular mechanisms.

Hypothesis

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Experimental Design

A total of 60 women who gave birth to a baby in the Faculty Hospital Motol (Czech Republic) were enrolled into the study approved by the local Institutional Review Board. The participants signed written informed consent and self-reported information on tobacco smoke exposure (type of exposure, number of cigarettes per day, exposure period) and life style during pregnancy (alcohol drinking, diet, area of residency etc.). Further, the women completed the questionnaire on pregnancy/delivery course (complications, diseases, medication, and delivery mode) and newborn characteristics (physical parameters, Apgar score) with the assistance of gynecologist. Only women without any health complications during pregnancy and their newborns without manifestation of pathological abnormalities were included in the study. Based on self-reported tobacco smoke exposure, the women were divided into two groups, non-smokers (NS, N=35) and passive smokers (PS, N=25). Former and active smokers were excluded from the study. Exposure to tobacco smoke was further evaluated by measurement of plasma cotinine levels in maternal peripheral blood and newborn cord blood using radioimmunoassay.

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Illumina HumanRef-8 v3
104 Samples Loaded: 104
Human (Homo sapiens)
placenta
Sample Set Spreadsheet
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Samples Preview
Sample ID parity !Sample Title Age (years) Apgar score (5s) Gestational age (weeks)
GSM743216 6 passive smoker 201, placenta 32 8 39
GSM743217 5 passive smoker 203, placenta 38 10 40
GSM743218 1 non-smoker 204, placenta 30 10 39
GSM743219 1 non-smoker 205, placenta 33 10 37
GSM743220 4 passive smoker 206, placenta 33 10 38
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sampleset4000010_sampleannotations_original.csv
Sample Set Spreadsheet
sampleset4000010_sampleannotations_original_group.csv
Sample Set Spreadsheet
sampleset4000010_sampleannotations_original_group.csv
Sample Set Spreadsheet
sampleset4000010_sampleannotations_original_group.csv
Sample Set Spreadsheet
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Sample ID Parity !Sample Title Age (years) Apgar score (5s) Gestational age (weeks) Maternal bmi Mode of delivery Newborn weight (g) Placental weight (g) Smoking status Group Baby's sex Cord blood cotinin (ng/ml) Maternal blood cotinin (ng/ml) Newborn length (cm) Placental volume (cm3)
GSM743216
6
passive smoker 201, placenta
32
8
39
29
vaginal
3540
680
passive smoker
placenta, passive smoker
F
1.1
0.84
50
1188
GSM743217
5
passive smoker 203, placenta
38
10
40
28
caesarean
4130
650
passive smoker
placenta, passive smoker
F
0.12
0.11
51
1080
GSM743218
1
non-smoker 204, placenta
30
10
39
23
vaginal
3370
690
non-smoker
placenta, non-smoker
M
0.15
0.14
50
1020
GSM743219
1
non-smoker 205, placenta
33
10
37
20
caesarean
2870
720
non-smoker
placenta, non-smoker
M
0.15
0.13
48
1080
GSM743220
4
passive smoker 206, placenta
33
10
38
25
caesarean
3520
unknown
passive smoker
placenta, passive smoker
F
0.18
0.09
49
1500
GSM743221
1
passive smoker 207, placenta
27
9
38
19
vaginal
2850
400
passive smoker
placenta, passive smoker
F
0.24
0.1
46
648
GSM743222
2
non-smoker 208, placenta
35
10
40
25
vaginal
3390
670
non-smoker
placenta, non-smoker
M
0.4
0.21
48
420
GSM743223
2
passive smoker 209, placenta
30
10
39
26
vaginal
3830
580
passive smoker
placenta, passive smoker
F
0.2
0.11
50
880
GSM743224
2
non-smoker 210, placenta
29
10
41
19
vaginal
3440
680
non-smoker
placenta, non-smoker
M
0.15
0.12
51
1188
GSM743225
1
non-smoker 211, placenta
30
10
40
21
vaginal
3680
700
non-smoker
placenta, non-smoker
M
0.53
0.26
50
1280
GSM743226
1
passive smoker 212, placenta
35
10
39
21
vaginal
3360
600
passive smoker
placenta, passive smoker
F
0.11
0.09
49
1875
GSM743227
2
passive smoker 215, placenta
34
10
38
24
vaginal
2270
620
passive smoker
placenta, passive smoker
M
no sample
0.46
43
1500
GSM743228
1
non-smoker 218, placenta
27
10
37
24
vaginal
2820
620
non-smoker
placenta, non-smoker
F
0.21
0.15
48
1725
GSM743229
1
passive smoker 219, placenta
22
10
39
17
vaginal
2610
700
passive smoker
placenta, passive smoker
F
1.4
1.32
49
1950
GSM743230
5
non-smoker 220, placenta
38
10
41
20
vaginal
4170
750
non-smoker
placenta, non-smoker
F
0.3
0.27
53
1188
GSM743231
1
non-smoker 222, placenta
30
10
42
21
caesarean
3730
650
non-smoker
placenta, non-smoker
M
0.28
0.2
52
720
GSM743232
1
passive smoker 225, placenta
30
10
38
18
vaginal
2970
600
passive smoker
placenta, passive smoker
M
1.31
1.24
48
864
GSM743233
2
non-smoker 226, placenta
31
9
41
20
vaginal
3570
650
non-smoker
placenta, non-smoker
F
0.17
0.16
51
864
GSM743234
1
non-smoker 228, placenta
34
10
41
18
vaginal
2810
600
non-smoker
placenta, non-smoker
F
0.09
0.09
45
2100
GSM743235
3
non-smoker 231, placenta
32
9
40
29
vaginal
3650
750
non-smoker
placenta, non-smoker
F
0.16
0.12
50
1500
GSM743236
2
passive smoker 232, placenta
34
10
40
37
vaginal
3170
650
passive smoker
placenta, passive smoker
F
0.36
0.49
49
1452
GSM743237
1
passive smoker 234, placenta
24
10
40
23
vaginal
3200
600
passive smoker
placenta, passive smoker
M
0.29
0.23
48
1440
GSM743238
1
non-smoker 236, placenta
33
10
39
27
vaginal
2980
620
non-smoker
placenta, non-smoker
F
0.28
0.09
48
1120
GSM743239
2
non-smoker 238, placenta
32
10
41
21
vaginal
3950
670
non-smoker
placenta, non-smoker
M
0.13
0.11
53
2700
GSM743240
3
non-smoker 240, placenta
31
10
38
17
vaginal
2880
620
non-smoker
placenta, non-smoker
F
0.23
0.33
50
576
GSM743241
2
non-smoker 241, placenta
28
10
41
21
vaginal
2860
650
non-smoker
placenta, non-smoker
M
0.1
0.08
46
972
GSM743242
6
passive smoker 245, placenta
31
10
39
22
vaginal
3600
690
passive smoker
placenta, passive smoker
M
1.18
1.45
51
1760
GSM743243
1
passive smoker 246, placenta
27
9
41
20
caesarean
3370
630
passive smoker
placenta, passive smoker
M
0.16
0.13
51
1200
GSM743244
1
non-smoker 248, placenta
35
10
40
26
vaginal
3690
600
non-smoker
placenta, non-smoker
F
0.15
0.12
53
1320
GSM743245
2
passive smoker 251, placenta
34
8
36
19
caesarean
2840
580
passive smoker
placenta, passive smoker
M
0.34
0.14
47
1500
GSM743246
1
passive smoker 256, placenta
26
10
41
21
vaginal
3500
730
passive smoker
placenta, passive smoker
M
1.57
1.09
49
1875
GSM743247
3
passive smoker 258, placenta
32
10
35
26
vaginal
3490
unknown
passive smoker
placenta, passive smoker
F
1.76
1.41
48
1152
GSM743248
1
non-smoker 259, placenta
31
10
39
21
vaginal
3690
720
non-smoker
placenta, non-smoker
F
0.25
0.17
53
972
GSM743249
2
non-smoker 260, placenta
31
10
38
19
vaginal
3460
unknown
non-smoker
placenta, non-smoker
F
0.2
0.19
48
448
GSM743250
2
non-smoker 261, placenta
32
10
38
28
vaginal
3940
unknown
non-smoker
placenta, non-smoker
F
0.16
0.13
53
3150
GSM743251
2
passive smoker 262, placenta
26
9
39
22
caesarean
4550
unknown
passive smoker
placenta, passive smoker
M
0.26
0.38
55
1656
GSM743252
2
passive smoker 263, placenta
31
8
37
24
vaginal
2650
unknown
passive smoker
placenta, passive smoker
F
1.36
1.41
48
720
GSM743253
1
non-smoker 265, placenta
24
10
40
30
vaginal
3530
unknown
non-smoker
placenta, non-smoker
M
0.26
0.14
51
800
GSM743254
2
non-smoker 266, placenta
32
10
38
18
vaginal
3250
700
non-smoker
placenta, non-smoker
F
0.23
0.3
51
1026
GSM743255
6
passive smoker 267, placenta
35
10
42
22
caesarean
3080
500
passive smoker
placenta, passive smoker
F
0.27
0.16
50
1140
GSM743256
2
non-smoker 268, placenta
32
10
40
19
vaginal
3040
unknown
non-smoker
placenta, non-smoker
F
0.25
0.2
49
1134
GSM743257
1
passive smoker 270, placenta
34
9
39
34
caesarean
3370
400
passive smoker
placenta, passive smoker
M
1.46
0.95
49
1875
GSM743258
1
passive smoker 274, placenta
24
9
39
20
vaginal
3400
unknown
passive smoker
placenta, passive smoker
M
0.25
0.2
51
880
GSM743259
2
non-smoker 275, placenta
30
10
40
20
vaginal
3650
640
non-smoker
placenta, non-smoker
M
0.11
0.14
51
1500
GSM743260
2
non-smoker 282, placenta
21
10
40
21
vaginal
3260
unknown
non-smoker
placenta, non-smoker
M
0.21
0.23
49
1800
GSM743261
2
non-smoker 284, placenta
27
10
36
29
vaginal
2870
unknown
non-smoker
placenta, non-smoker
F
0.23
0.11
48
1000
GSM743262
1
non-smoker 287, placenta
30
10
39
21
vaginal
2620
unknown
non-smoker
placenta, non-smoker
M
0.31
0.12
47
1071
GSM743263
unknown
passive smoker 289, placenta
27
9
41
21
vaginal
4150
unknown
passive smoker
placenta, passive smoker
F
0.27
0.19
53
1188
GSM743264
1
non-smoker 291, placenta
29
10
39
21
vaginal
3040
unknown
non-smoker
placenta, non-smoker
M
0.44
0.29
49
864
GSM743265
2
non-smoker 292, placenta
36
10
38
22
vaginal
2890
unknown
non-smoker
placenta, non-smoker
M
0.65
0.8
46
800
GSM743266
3
non-smoker 294, placenta
35
10
40
22
vaginal
4720
unknown
non-smoker
placenta, non-smoker
M
0.12
0.12
53
1080
GSM743267
3
passive smoker 295, placenta
30
10
37
26
vaginal
3720
700
passive smoker
placenta, passive smoker
F
0.24
0.31
49
640
GSM743268
1
non-smoker 296, placenta
30
10
41
22
vaginal
3770
unknown
non-smoker
placenta, non-smoker
F
0.2
0.12
53
972
GSM743269
6
non-smoker 297, placenta
33
10
38
29
vaginal
3240
unknown
non-smoker
placenta, non-smoker
M
0.28
0.29
52
864
GSM743270
1
non-smoker 298, placenta
30
10
37
22
caesarean
3250
unknown
non-smoker
placenta, non-smoker
F
0.28
0.18
49
864
GSM743271
1
non-smoker 299, placenta
30
10
41
20
vaginal
3770
unknown
non-smoker
placenta, non-smoker
M
0.16
0.12
50
1794
GSM743272
2
non-smoker 300, placenta
30
9
39
21
vaginal
2570
unknown
non-smoker
placenta, non-smoker
M
0.36
0.29
47
810
GSM743273
6
passive smoker 201, cord blood
31.78370979
8
39
28.76397107
vaginal
3540
680
passive smoker
cord blood, passive smoker
F
1.096248128
0.839590006
50
1188
GSM743274
5
passive smoker 203, cord blood
38.31074606
10
40
27.51338489
caesarean
4130
650
passive smoker
cord blood, passive smoker
F
0.115202267
0.108987726
51
1080
GSM743275
1
non-smoker 204, cord blood
29.80150582
10
39
23.183391
vaginal
3370
690
non-smoker
cord blood, non-smoker
M
0.147580246
0.144795088
50
1020
GSM743276
2
passive smoker 209, cord blood
30.20396988
10
39
25.86451247
vaginal
3830
580
passive smoker
cord blood, passive smoker
F
0.196401244
0.11
50
880
GSM743277
2
non-smoker 210, cord blood
29.12251882
10
41
19.48696145
vaginal
3440
680
non-smoker
cord blood, non-smoker
M
0.154044299
0.118542103
51
1188
GSM743278
1
non-smoker 211, cord blood
29.62628337
10
40
20.9572742
vaginal
3680
700
non-smoker
cord blood, non-smoker
M
0.53
0.26
50
1280
GSM743279
1
passive smoker 212, cord blood
34.65845311
10
39
20.90419501
vaginal
3360
600
passive smoker
cord blood, passive smoker
F
0.11
0.09
49
1875
GSM743280
2
passive smoker 215, cord blood
34.49691992
10
38
23.7953599
vaginal
2270
620
passive smoker
cord blood, passive smoker
M
no sample
0.46
43
1500
GSM743281
1
non-smoker 218, cord blood
26.87474333
10
37
23.73866213
vaginal
2820
620
non-smoker
cord blood, non-smoker
F
0.210152083
0.149427099
48
1725
GSM743282
1
passive smoker 219, cord blood
21.90554415
10
39
16.80613424
vaginal
2610
700
passive smoker
cord blood, passive smoker
F
1.398597354
1.322443314
49
1950
GSM743283
1
non-smoker 222, cord blood
30.36002738
10
42
20.54863176
caesarean
3730
650
non-smoker
cord blood, non-smoker
M
0.276631334
0.2
52
720
GSM743284
1
passive smoker 225, cord blood
29.83983573
10
38
18.02595738
vaginal
2970
600
passive smoker
cord blood, passive smoker
M
1.313161625
1.235355728
48
864
GSM743285
2
non-smoker 226, cord blood
31.23613963
9
41
19.53125
vaginal
3570
650
non-smoker
cord blood, non-smoker
F
0.169704038
0.164599723
51
864
GSM743286
1
non-smoker 228, cord blood
34.14921287
10
41
18.42403628
vaginal
2810
600
non-smoker
cord blood, non-smoker
F
0.087563993
0.087563993
45
2100
GSM743287
3
non-smoker 231, cord blood
32.30937714
9
40
28.73174689
vaginal
3650
750
non-smoker
cord blood, non-smoker
F
0.156431416
0.121901448
50
1500
GSM743288
2
passive smoker 232, cord blood
33.61806982
10
40
36.84424013
vaginal
3170
650
passive smoker
cord blood, passive smoker
F
0.360452481
0.49
49
1452
GSM743289
1
passive smoker 234, cord blood
24.21355236
10
40
22.58324288
vaginal
3200
600
passive smoker
cord blood, passive smoker
M
0.29
0.23
48
1440
GSM743290
1
non-smoker 236, cord blood
32.99657769
10
39
26.953125
vaginal
2980
620
non-smoker
cord blood, non-smoker
F
0.276288862
0.089358617
48
1120
GSM743291
2
non-smoker 238, cord blood
32.08213552
10
41
20.64341393
vaginal
3950
670
non-smoker
cord blood, non-smoker
M
0.133819485
0.110690542
53
2700
GSM743292
3
non-smoker 240, cord blood
30.69130732
10
38
17.44126398
vaginal
2880
620
non-smoker
cord blood, non-smoker
F
0.23
0.334019804
50
576
GSM743293
2
non-smoker 241, cord blood
28.41615332
10
41
20.70081674
vaginal
2860
650
non-smoker
cord blood, non-smoker
M
0.102899865
0.077977825
46
972
GSM743294
6
passive smoker 245, cord blood
30.92128679
10
39
22.09317005
vaginal
3600
690
passive smoker
cord blood, passive smoker
M
1.18
1.45
51
1760
GSM743295
1
passive smoker 246, cord blood
27.40041068
9
41
19.72386588
caesarean
3370
630
passive smoker
cord blood, passive smoker
M
0.16336322
0.133819485
51
1200
GSM743296
1
non-smoker 248, cord blood
34.52703628
10
40
25.60553633
vaginal
3690
600
non-smoker
cord blood, non-smoker
F
0.150394684
0.123797136
53
1320
GSM743297
2
passive smoker 251, cord blood
34.00684463
8
36
19.00390835
caesarean
2840
580
passive smoker
cord blood, passive smoker
M
0.337285997
0.139130944
47
1500
GSM743298
4
non-smoker 252, cord blood
33.87542779
10
39
26.98961938
caesarean
3770
600
non-smoker
cord blood, non-smoker
F
0.294328957
0.225224379
52
2250
GSM743299
unknown
passive smoker 253, cord blood
48.95824778
10
39
22.48132907
caesarean
3600
500
passive smoker
cord blood, passive smoker
M
0.115645287
0.154098255
50
1350
GSM743300
1
passive smoker 256, cord blood
25.93839836
10
41
21.23057202
vaginal
3500
730
passive smoker
cord blood, passive smoker
M
1.570848085
1.088873153
49
1875
GSM743301
3
passive smoker 258, cord blood
32.48733744
10
35
25.51020408
vaginal
3490
unknown
passive smoker
cord blood, passive smoker
F
1.758594711
1.405734212
48
1152
GSM743302
2
passive smoker 262, cord blood
25.5797399
9
39
21.51385851
caesarean
4550
unknown
passive smoker
cord blood, passive smoker
M
0.25891947
0.379274063
55
1656
GSM743303
2
passive smoker 263, cord blood
30.55715264
8
37
24.05693475
vaginal
2650
unknown
passive smoker
cord blood, passive smoker
F
1.355280925
1.411605772
48
720
GSM743304
1
non-smoker 265, cord blood
23.97809719
10
40
29.75778547
vaginal
3530
unknown
non-smoker
cord blood, non-smoker
M
0.25891947
0.138443215
51
800
GSM743305
2
non-smoker 266, cord blood
32.15605749
10
38
18.37682515
vaginal
3250
700
non-smoker
cord blood, non-smoker
F
0.232671906
0.295554811
51
1026
GSM743306
6
passive smoker 267, cord blood
35.08555784
10
42
22.03172568
caesarean
3080
500
passive smoker
cord blood, passive smoker
F
0.266948684
0.16
50
1140
GSM743307
2
non-smoker 268, cord blood
32.11772758
10
40
19.10009183
vaginal
3040
unknown
non-smoker
cord blood, non-smoker
F
0.251131757
0.199723227
49
1134
GSM743308
1
passive smoker 270, cord blood
34.33264887
9
39
34.14007572
caesarean
3370
400
passive smoker
cord blood, passive smoker
M
1.462806942
0.953902455
49
1875
GSM743309
1
passive smoker 274, cord blood
24.28747433
9
39
19.70553242
vaginal
3400
unknown
passive smoker
cord blood, passive smoker
M
0.248161846
0.204690319
51
880
GSM743310
2
non-smoker 284, cord blood
26.95687885
10
36
28.57796068
vaginal
2870
unknown
non-smoker
cord blood, non-smoker
F
0.231164488
0.111989992
48
1000
GSM743311
1
non-smoker 287, cord blood
29.85626283
10
39
21.23057202
vaginal
2620
unknown
non-smoker
cord blood, non-smoker
M
0.31015492
0.120224535
47
1071
GSM743312
unknown
passive smoker 289, cord blood
27.47980835
9
41
21.10726644
vaginal
4150
unknown
passive smoker
cord blood, passive smoker
F
0.269123045
0.186844122
53
1188
GSM743313
1
non-smoker 291, cord blood
29.32511978
10
39
21.2585034
vaginal
3040
unknown
non-smoker
cord blood, non-smoker
M
0.442229936
0.294828017
49
864
GSM743314
2
non-smoker 292, cord blood
35.59206023
10
38
21.50188649
vaginal
2890
unknown
non-smoker
cord blood, non-smoker
M
0.650015266
0.796091983
46
800
GSM743315
3
passive smoker 293, cord blood
33.08966461
10
39
23.52941176
vaginal
3160
unknown
passive smoker
cord blood, passive smoker
F
0.15
0.07
50
576
GSM743316
3
non-smoker 294, cord blood
35.00342231
10
40
21.7046498
vaginal
4720
unknown
non-smoker
cord blood, non-smoker
M
0.124566153
0.123936452
53
1080
GSM743317
3
passive smoker 295, cord blood
30.29158111
10
37
25.86451247
vaginal
3720
700
passive smoker
cord blood, passive smoker
F
0.24
0.308288342
49
640
GSM743318
1
non-smoker 299, cord blood
29.96303901
10
41
20.47826661
vaginal
3770
unknown
non-smoker
cord blood, non-smoker
M
0.158418373
0.118628907
50
1794
GSM743319
2
non-smoker 300, cord blood
29.5523614
9
39
20.703125
vaginal
2570
unknown
non-smoker
cord blood, non-smoker
M
0.355287202
0.291914827
47
810

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