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Culturing Cytotrophoblasts Reverses Gene Dysregulation in Preeclampsia Revealing Possible Causes GSE40182

Purpose

During human pregnancy, a subset of placental cytotrophoblasts (CTBs) differentiates into cells that aggressively invade the uterus and its vasculature, anchoring the progeny and rerouting maternal blood to the placenta. In preeclampsia (PE), CTB invasion is limited, reducing placental perfusion and/or creating intermittent flow. This syndrome, affecting 4-8% of pregnancies, entails maternal vascular alterations (e.g., high blood pressure, proteinuria, and edema) ± fetal growth restriction. The only cure is removal of the faulty placenta, i.e., delivery. Previously we showed that defective CTB differentiation contributes to the placental component of PE, but the causes were unknown. Here, CTBs isolated from PE and control placentas were cultured for 48 h, enabling differentiation/invasion. In various severe forms of PE, transcriptomics revealed common aberrations in CTB gene expression immediately after isolation that resolved in culture. The upregulated genes included SEMA3B. Adding this protein to normal CTBs inhibited invasion and re-created aspects of the phenotype of these cells in PE. Additionally, SEMA3B downregulated VEGF signaling through the PI3K/AKT and GSK3 pathways, effects that were observed in PE CTBs. We propose that, in severe PE, the in vivo environment dysregulates CTB gene expression, the autocrine actions of the upregulated molecules, including SEMA3B, impair differentiation/invasion/signaling and patient-specific factors determine the signs.

Hypothesis

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Experimental Design

Villous cytotrophoblasts were isolated from preeclampsia placentas (PRE, n=5) and placentas of preterm labor patients without signs of infection (PTL, n=5), which served as gestation-matched controls. To better understand the CTB phenotype in the context of PE variants, we included patients with the most clinically significant forms of this condition that necessitated preterm delivery: women with severe PE ± intrauterine growth restrictions, PE with superimposed hypertension and HELLP syndrome (hemolysis, elevated liver enzymes; low platelet count). RNA was purified immediately after the cells were isolated (0 h) and after 12, 24 and 48 h in culture. The relative gene expression across the whole genome was profiled using the Affymetrix HG-U133Plus 2.0 GeneChip platform. Array quality was assesed using RMAExpress. One sample of preterm labor collected at 48h was omitted (39 arrays total). We used both LIMMA and maSigPro (R/Bioconductor) to determine differentially expressed genes.

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Affymetrix HG-U133_Plus_2
39 Samples Loaded: 39
Human (Homo sapiens)
placenta
Pre-eclampsia
Sample Set Spreadsheet
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Samples Preview
Sample ID tissue phenotype !Sample Title Group Culture time (hrs)
GSM987946 placenta preterm labor Preterm labor trophoblasts at 0hr, biological replicate 1 control, 0 hr differentiation 0
GSM987947 placenta preterm labor Preterm labor trophoblasts at 0hr, biological replicate 2 control, 0 hr differentiation 0
GSM987948 placenta preterm labor Preterm labor trophoblasts at 0hr, biological replicate 3 control, 0 hr differentiation 0
GSM987949 placenta preterm labor Preterm labor trophoblasts at 0hr, biological replicate 4 control, 0 hr differentiation 0
GSM987950 placenta preterm labor Preterm labor trophoblasts at 0hr, biological replicate 5 control, 0 hr differentiation 0
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sampleset4000007_sampleannotations_group.csv
Sample Set Spreadsheet
sampleset4000007_sampleannotations_group.csv
Sample Set Spreadsheet
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Sample ID Tissue Phenotype !Sample Title Group Culture time (hrs)
GSM987946
placenta
preterm labor
Preterm labor trophoblasts at 0hr, biological replicate 1
control, 0 hr differentiation
0
GSM987947
placenta
preterm labor
Preterm labor trophoblasts at 0hr, biological replicate 2
control, 0 hr differentiation
0
GSM987948
placenta
preterm labor
Preterm labor trophoblasts at 0hr, biological replicate 3
control, 0 hr differentiation
0
GSM987949
placenta
preterm labor
Preterm labor trophoblasts at 0hr, biological replicate 4
control, 0 hr differentiation
0
GSM987950
placenta
preterm labor
Preterm labor trophoblasts at 0hr, biological replicate 5
control, 0 hr differentiation
0
GSM987951
placenta
preterm labor
Preterm labor trophoblasts at 12hr, biological replicate 1
control, 12 hr differentiation
12
GSM987952
placenta
preterm labor
Preterm labor trophoblasts at 12hr, biological replicate 2
control, 12 hr differentiation
12
GSM987953
placenta
preterm labor
Preterm labor trophoblasts at 12hr, biological replicate 3
control, 12 hr differentiation
12
GSM987954
placenta
preterm labor
Preterm labor trophoblasts at 12hr, biological replicate 4
control, 12 hr differentiation
12
GSM987955
placenta
preterm labor
Preterm labor trophoblasts at 12hr, biological replicate 5
control, 12 hr differentiation
12
GSM987956
placenta
preterm labor
Preterm labor trophoblasts at 24hr, biological replicate 1
control, 24 hr differentiation
24
GSM987957
placenta
preterm labor
Preterm labor trophoblasts at 24hr, biological replicate 2
control, 24 hr differentiation
24
GSM987958
placenta
preterm labor
Preterm labor trophoblasts at 24hr, biological replicate 3
control, 24 hr differentiation
24
GSM987959
placenta
preterm labor
Preterm labor trophoblasts at 24hr, biological replicate 4
control, 24 hr differentiation
24
GSM987960
placenta
preterm labor
Preterm labor trophoblasts at 24hr, biological replicate 5
control, 24 hr differentiation
24
GSM987961
placenta
preterm labor
Preterm labor trophoblasts at 48hr, biological replicate 1
control, 48 hr differentiation
48
GSM987962
placenta
preterm labor
Preterm labor trophoblasts at 48hr, biological replicate 2
control, 48 hr differentiation
48
GSM987963
placenta
preterm labor
Preterm labor trophoblasts at 48hr, biological replicate 3
control, 48 hr differentiation
48
GSM987964
placenta
preterm labor
Preterm labor trophoblasts at 48hr, biological replicate 4
control, 48 hr differentiation
48
GSM987965
placenta
preeclampsia
Preeclampsia trophoblasts at 0hr, biological replicate 1
Pre-eclampsia, 0 hr differentiation
0
GSM987966
placenta
preeclampsia
Preeclampsia trophoblasts at 0hr, biological replicate 2
Pre-eclampsia, 0 hr differentiation
0
GSM987967
placenta
preeclampsia
Preeclampsia trophoblasts at 0hr, biological replicate 3
Pre-eclampsia, 0 hr differentiation
0
GSM987968
placenta
preeclampsia
Preeclampsia trophoblasts at 0hr, biological replicate 4
Pre-eclampsia, 0 hr differentiation
0
GSM987969
placenta
preeclampsia
Preeclampsia trophoblasts at 0hr, biological replicate 5
Pre-eclampsia, 0 hr differentiation
0
GSM987970
placenta
preeclampsia
Preeclampsia trophoblasts at 12hr, biological replicate 6
Pre-eclampsia, 12 hr differentiation
12
GSM987971
placenta
preeclampsia
Preeclampsia trophoblasts at 12hr, biological replicate 7
Pre-eclampsia, 12 hr differentiation
12
GSM987972
placenta
preeclampsia
Preeclampsia trophoblasts at 12hr, biological replicate 8
Pre-eclampsia, 12 hr differentiation
12
GSM987973
placenta
preeclampsia
Preeclampsia trophoblasts at 12hr, biological replicate 9
Pre-eclampsia, 12 hr differentiation
12
GSM987974
placenta
preeclampsia
Preeclampsia trophoblasts at 12hr, biological replicate 10
Pre-eclampsia, 12 hr differentiation
12
GSM987975
placenta
preeclampsia
Preeclampsia trophoblasts at 24hr, biological replicate 11
Pre-eclampsia 24 hr differentiation
24
GSM987976
placenta
preeclampsia
Preeclampsia trophoblasts at 24hr, biological replicate 12
Pre-eclampsia 24 hr differentiation
24
GSM987977
placenta
preeclampsia
Preeclampsia trophoblasts at 24hr, biological replicate 13
Pre-eclampsia 24 hr differentiation
24
GSM987978
placenta
preeclampsia
Preeclampsia trophoblasts at 24hr, biological replicate 14
Pre-eclampsia 24 hr differentiation
24
GSM987979
placenta
preeclampsia
Preeclampsia trophoblasts at 24hr, biological replicate 15
Pre-eclampsia 24 hr differentiation
24
GSM987980
placenta
preeclampsia
Preeclampsia trophoblasts at 48hr, biological replicate 16
Pre-eclampsia 48 hr differentiation
48
GSM987981
placenta
preeclampsia
Preeclampsia trophoblasts at 48hr, biological replicate 17
Pre-eclampsia 48 hr differentiation
48
GSM987982
placenta
preeclampsia
Preeclampsia trophoblasts at 48hr, biological replicate 18
Pre-eclampsia 48 hr differentiation
48
GSM987983
placenta
preeclampsia
Preeclampsia trophoblasts at 48hr, biological replicate 19
Pre-eclampsia 48 hr differentiation
48
GSM987984
placenta
preeclampsia
Preeclampsia trophoblasts at 48hr, biological replicate 20
Pre-eclampsia 48 hr differentiation
48

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