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Clinical

Profiling Gene Expression in Human Placentae of Different Gestational Ages: an OPRU Network and UW SCOR Study GSE9984

Purpose

We used a whole genome approach to identify major functional gene categories (including xenobiotic transporters and metabolizing enzymes) whose expression depends on gestational age. STUDY DESIGN: We compared gene expression profiles of 1st (45-59 days) and 2nd trimester (109-115 days), and C-section term placentae. RESULTS: In 1st trimester placentae, genes related to cell cycle, DNA, aminoacids and carbohydrate metabolism were significantly overrepresented, while genes related to signal transduction were downregulated. In the organism defense category, we identified genes involved in chemical response, metabolism, and transport. Analysis of signal transduction pathways suggested, and subsequently confirmed independently, that the Wnt pathway was regulated by gestational age. CONCLUSIONS: Our study will serve as a reference database to gain insight into the regulation of gene expression in the developing placentae and, thus, allow comparisons with placentae from complicated pregnancies such as those in women experiencing gestational diabetes, pre-eclampsia and teratogenic sequelae.Keywords: time series

Hypothesis

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Experimental Design

Comparison of plaental gene expression profiles of three gestational stages (1st trimester (45-59 days), 2nd trimester (109-115 days), and C-section term placentae), with four replicates each.

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Affymetrix HG-U133_Plus_2
12 Samples Loaded: 12
Human (Homo sapiens)
placenta
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title Group
GSM252349 First trimester placenta Grp1H17634 First trimester
GSM252350 First trimester placenta Grp1H17790 First trimester
GSM252351 First trimester placenta Grp1H18035 First trimester
GSM252352 First trimester placenta Grp1H18075 First trimester
GSM252353 Second trimester placenta Grp2H17464 Second trimester
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File
sampleset4000002_sampleannotations_group.csv
Sample Set Spreadsheet
sampleset4000002_sampleannotations_group.csv
Sample Set Spreadsheet
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Sample ID !Sample Title Group
GSM252349
First trimester placenta Grp1H17634
First trimester
GSM252350
First trimester placenta Grp1H17790
First trimester
GSM252351
First trimester placenta Grp1H18035
First trimester
GSM252352
First trimester placenta Grp1H18075
First trimester
GSM252353
Second trimester placenta Grp2H17464
Second trimester
GSM252354
Second trimester placenta Grp2H17607
Second trimester
GSM252355
Second trimester placenta Grp2H17795
Second trimester
GSM252356
Second trimester placenta Grp2H17812
Second trimester
GSM252357
Term placenta Grp3HT5
Term
GSM252358
Term placenta Grp3HT6
Term
GSM252359
Term placenta Grp3HT7
Term
GSM252360
Term placenta Grp3HT8
Term

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